2004

• Pfeffer S., Zavolan M., Grässer F.A., Chien M., Russo J.J., Ju J., John B.,
  Enright A.J., Marks D., Sander C., Tuschl T.; Science 304(5671):734-6 (2004)
  'Identification of virus-encoded microRNAs'
  

• Goldovsky L., Cases I., Enright A.J., Ouzounis C.A.;
  Applied Bioinformatics In Press (2004)
  'BioLayout Java, versatile network visualization of structural and functional relationships'
  

• Bader G.D.,Enright A.J.;In Press Bioinformatics: a Practical Guide to the Analysis of Genes and Proteins 3rd Ed, Wiley (2004)
  'Biomolecular Interactions and Biological Pathways'

• Enright A.J., Skrabanek L., Bader G.D.;
  In Press The Proteomics Handbook, Humana Press (ed. Walker J.) (2004)
  'Computational Prediction of Protein-Protein Interactions'

• Pereira-Leal J.B.^†, Enright A.J.^†, Ouzounis C.A.; Proteins (1) 54:49-57 (2004)
  'Detection of functional modules from protein interaction networks'
  ^†denotes joint first authors
  

2003

• Enright A.J., John B., Gaul U., Tuschl T., Sander C., Marks D.; Genome Biology 5:R1 (2003)
  'MicroRNA targets in Drosophila'
  

• Ouzounis C.A., Coulson M.R., Enright A.J., Kunin V., Pereira-Leal J.B.; Nature Reviews Genetics 4:508-519 (2003)
  'Classification schemes for protein structure and function'
  

• Enright A.J.^†, Kunin V.^†, Ouzounis C.A.; Nucleic Acids Research 31(15) 4632-4638 (2003)
  'Protein families and TRIBES in genome sequence space'
  ^†denotes joint first authors

• Janssen P.J.^†, Enright A.J.^†, Audit B., Cases I., Goldovsky L., Harte N., Kunin V., Ouzounis C.A.; Bioinformatics 19(11) 1451-1452 (2003)
  'COGENT: a flexible data environment for computational genomics'
  ^†denotes joint first authors

• Iliopoulos I., Enright A.J., Poullet P., Ouzounis C.A.; Comparative and Functional Genomics 4: 337-341 (2003)
  'Mapping functional associations in the entire genome of Drosophila melanogaster'

• Kunin V., Cases I., Enright A.J., de Lorenzo V., Ouzounis C.A.; Genome Biology 4:401 (2003)
  'Myriads of protein families, and still counting'
  

• Iliopoulos I., Tsoka S., Andrade M., Enright A.J., Carroll M., Poullet P., Promponas V., Liakopoulos T., Palaios G., Pasquier C., Hamodrakas S., Tamames J., Yagnik A., Tramontano A., Devos D., Blaschke C., Valencia A., Brett D., Martin D., Leroy C., Rigoutsos I., Sander C., Ouzounis C.A.; Bioinformatics (19):717-726 (2003)
  'Evaluation of Annotation Strategies using an Entire Genome Sequence'
  

2002

• Enright A.J.; Ph.D. thesis, University of Cambridge (2002)
  'Computational Analysis of Protein Function in Complete Genomes'

• Enright A.J., Van Dongen S., Ouzounis C.A.; Nucleic Acids Research 30(7):1575-1584 (2002)
  'An efficient algorithm for the large-scale detection of protein families'
  

• Enright A.J., Ouzounis C.A.; Protein-Protein Interactions: a Molecular Cloning Manual (ed. Golemis E), pp 595-621. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. (2002)
  'Computational Detection of Genome-wide Protein Interaction'

2001

• Boucher L., Ouzounis C.A., Enright A.J., Blencowe B.J; RNA 7:1693-1701 (2001)
  'A Genome-wide survey of RS-domain proteins'
  

• Enright A.J., Ouzounis C.A.; Bioinformatics 17: 853-854 (2001)
  'Biolayout - An Automatic Graph Layout Algorithm for Similarity Visualisation and Analysis'
  

• Enright A.J., Ouzounis C.A.; Genome Biology 2(9):research0034.1-0034.7 (2001)
  'Functional Associations of Proteins in entire Genomes via exhaustive detection of Gene fusion events'
  

• Coulson R.M., Enright A.J., Ouzounis C.A.; Bioinformatics 17: 95-97 (2001)
  'Transcription-associated protein families are primarily taxon-specific'
  

• Iliopoulos I., Enright A.J., Ouzounis C.A.; Pacific Symposium on Biocomputing 384-395 (2001)
  'Textquest: document clustering of medline abstracts for concept discovery in molecular biology'
  

2000

• Promponas V.J, Enright A.J., Kreil D., Tsoka S., Leroy C., Hamodrakas S., Sander C., Ouzounis C.A.; Bioinformatics 16: 915-22 (2000)
  'CAST: an iterative algorithm for the Complexity Analysis of Sequence Tracts'
  

• ^‡Enright A.J., Tsoka S., Ouzounis C.A.; ERCIM News 43: 8-9 (2000)
  'Making sense of complete genomes'

• Enright A.J., Ouzounis C.A.; Bioinformatics 16: 451-457 (2000)
  'RAGE, a robust algorithm for sequence clustering and domain detection'
  

• McLysaght A., Enright A.J., Skrabanek L., Wolfe K.H.; Yeast 17: 22-36. (2000)
  'Estimation of synteny conservation and genome compaction between pufferfish (fugu) and human'
  

1999

• Enright A.J., Iliopoulos I., Krypides N., Ouzounis C.A.; Nature 402, 86-90 (1999)
  'Protein interaction maps for complete genomes based on gene fusion events'
  Related Information:
  Nature News & Views: Sali A; Nature 402, 23-24 (1999) 'Functional links between proteins'

1998

• ^‡Enright A.J.; Moderatorship Dissertation (1998),
  Department of Genetics, University of Dublin, Trinity College.
  'Estimation of the percentage linkage conservation between the human and pufferfish (Fugu rubripes) genomes'