This plug-in loads an expression data file (consult the Cytoscape manual to learn about the format of this type of file) and then allows the user to color the nodes in a network according to their expression values. The GUI works like a VCR, with play, pause, and stop buttons. If the user presses the play button, the plug-in will iterate over all the conditions in the expression file and color the nodes according to their corresponding expression values.
Released by: Iliana Avila-Campillo, Galitski Group, Institute for Systems Biology.
This plugin enables Cytoscape to import data formatted in the GEO Simple Omnibus Format in Text (SOFT). SOFT is a text file format used to represent and exchange Gene Expression Data.
For an earlier version of this Plugin, which works in Cytoscape 1.1, refer to the Data Services Plugin on the Cytoscape 1.1 Plugins page.
Released by: Sander Group, Computational Biology Center, Memorial Sloan-Kettering Cancer Center.
