Gene Ranker: TCGA GBM 6000

Gene Details: SMARCA4

Gene Information:
  • Entrez Gene ID: 6597
  • Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
  • Synonyms: BAF190|BRG1|FLJ39786|SNF2|SNF2-BETA|SNF2L4|SNF2LB|SWI2|hSNF2b
  • MapBack Info [graphical summary of known mutations in COSMIC.]

Rank-o-Meter
  • Score: 8.000
  • Rank: 38 (of 7658)
  • red = low ranking gene
  • green = high ranking gene

SMARCA4 has been identified in a total of 9 gene list(s). Details are below.

Line of Evidence Score Comments
BACKGROUND: Broad 2000 Cancer Gene List
 1.000 --
BACKGROUND: COSMIC human mutated genes, >= 2% of all samples
 1.000 0.028985507
BACKGROUND: Ovarian cancer candidate genes
 1.000 Hormone
PATHWAYS: Network Analysis: 2,3 altered neighbors
 0.500 Network analysis indicates that SMARCA4 is functionally connected to 3 altered genes: RB1 SMARCA2 TP53.
PATHWAYS: P53 Network
 1.000 Number of mutations in the Vogelstein discovery phase: 3
Number of mutations in the Vogelstein prevalence phase: 5
PATHWAYS: Wnt and NOTCH
 1.000 --
RECENT STUDY: Hopkins Pancreatic cancer
 1.000 --
TCGA COPY NUMBER: RAE Regions of Interest
 1.000 --
TCGA GENE EXPRESSION: Subtype analysis
 0.500 --
Total Score: 8.000

Gene does not appear in any of these lists:

BACKGROUND: Genes in fragile sites
BACKGROUND: NCI Cancer Genes - lung
BACKGROUND: NCI Cancer Genes - ovarian
BACKGROUND: Review Paper by Hahn and Weinberg
BACKGROUND: Review Paper by Volgestein and Kinzler
BACKGROUND: Sanger Gene Census
PATHWAYS: Cancer-associated pathways, 1 mutation
PATHWAYS: Cancer-associated pathways, >=2 mutations
PATHWAYS: Expert lists
PATHWAYS: Extension of core GBM pathways
PATHWAYS: GBM pathways
PATHWAYS: Hippo pathway
PATHWAYS: KEGG COSMIC intersection
PATHWAYS: KEGG metabolic pathways
PATHWAYS: Network Analysis: >= 4 altered neighbors
PATHWAYS: Network Analysis: Sven Nelander
RECENT STUDY: Hopkins Breast/colorectal cancer
RECENT STUDY: Hopkins GBM
RECENT STUDY: TSP Lung adenocarcinoma
TCGA GENE EXPRESSION: Alternatively spliced genes (tumor vs normal)
TCGA GENE EXPRESSION: Alternatively spliced genes associated to tumor subtype
TCGA GENE EXPRESSION: Differentially expressed between tumor and normal
TCGA GENE EXPRESSION: Invasion-associated
TCGA GENE EXPRESSION: Variably expressed
TCGA METHYLATION: Hypermethylated in GBM tumors
TCGA RESEQUENCE: 1 mutation
TCGA RESEQUENCE: 2 or more mutations
TCGA SEQUENCED: GBM phase 1
TCGA SEQUENCED: GBM phase 2
TCGA SEQUENCING: Exclude