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Publications
Ab initio thermodynamic modeling of distal multisite transcription regulation. (2008)
Nucleic Acids Res. 2008 Feb;36(3):726-31.
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Failure of the work-Hamiltonian connection for free-energy calculations. (2008)
Phys Rev Lett. 2008 Jan 18;100(2):020601.
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Synthetic cooperation in engineered yeast populations. (2007)
Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1877-82.
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Multilevel deconstruction of the "in vivo" behavior of looped DNA-protein complexes (2007)
PLoS ONE 2(4): e355. doi:10.1371/journal.pone.0000355 (2007).
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DNA looping: the consequences and its control. (2006)
Curr Opin Struct Biol. 2006 Jun;16(3):344-50.
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Signal processing in the TGF-beta superfamily ligand-receptor network. (2006)
PLoS Comput Biol. 2006 Jan;2(1):e3.
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Stochastic dynamics of macromolecular-assembly networks (2006)
Nature/EMBO Mol Syst Biol. 2006; 2, doi:10.1038/msb4100061
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Modularizing gene regulation (2006)
Nature/EMBO Mol Syst Biol. 2006; 2, doi:10.1038/msb4100058
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The mesoscopic dynamics of thermodynamic systems (2005)
J Phys Chem B. 2005; 109 (46): 21502-21515
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DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise. (2005)
Curr Opin Genet Dev. 2005 Apr;15(2):136-44.
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Inferring the in vivo looping properties of DNA. (2005)
Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17642-5.
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From molecular noise to behavioural variability in a single bacterium. (2004)
Nature. 2004 Apr 1;428(6982):574-8.
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DNA looping and physical constraints on transcription regulation (2003)
J Mol Biol. 2003 Aug 29;331(5):981-9
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Modeling network dynamics: the lac operon, a case study (2003)
J Cell Biol. 2003 May 12;161(3):471-6
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Mechanisms of noise-resistance in genetic oscillators (2002)
Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):5988-92. Epub 2002 Apr 23
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Thermodynamics "beyond" local equilibrium (2001)
Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11081-4. Epub 2001 Sep 18
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Noise and periodic modulations in neural excitable media (1999)
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 May;59(5 Pt B):5920-7
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Divergent Signal-to-Noise Ratio and Stochastic Resonance in Monostable Systems (1996)
PHYSICAL REVIEW LETTERS. 1996 Sep 30;77(14):2863-2866
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