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Nicholas Socci
A mammalian microRNA expression atlas based on small RNA library sequencing. (2007)
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T
Cell. 2007 Jun 29;129(7):1401-14.
 
The AKT-mTOR pathway plays a critical role in the development of leiomyosarcomas. (2007)
Hernando E, Charytonowicz E, Dudas ME, Menendez S, Matushansky I, Mills J, Socci ND, Behrendt N, Ma L, Maki RG, Pandolfi PP, Cordon-Cardo C
Nat Med. 2007 Jun;13(6):748-53.
 
Gene expression profiling of liposarcoma identifies distinct biological types/subtypes and potential therapeutic targets in well-differentiated and dedifferentiated liposarcoma. (2007)
Singer S, Socci ND, Ambrosini G, Sambol E, Decarolis P, Wu Y, O'Connor R, Maki R, Viale A, Sander C, Schwartz GK, Antonescu CR
Cancer Res. 2007 Jul 15;67(14):6626-36.
 
Derivation of engraftable skeletal myoblasts from human embryonic stem cells. (2007)
Barberi T, Bradbury M, Dincer Z, Panagiotakos G, Socci ND, Studer L
Nat Med. 2007 May;13(5):642-8.
 
A polymorphism in HDM2 (SNP309) associates with early onset in superficial tumors, TP53 mutations, and poor outcome in invasive bladder cancer. (2007)
Sanchez-Carbayo M, Socci ND, Kirchoff T, Erill N, Offit K, Bochner BH, Cordon-Cardo C
Clin Cancer Res. 2007 Jun 1;13(11):3215-20.
 
Directed differentiation and transplantation of human embryonic stem cell-derived motoneurons. (2007)
Lee H, Shamy GA, Elkabetz Y, Schofield CM, Harrsion NL, Panagiotakos G, Socci ND, Tabar V, Studer L
Stem Cells. 2007 Aug;25(8):1931-9.
 
Identification of angiogenesis/metastases genes predicting chemoradiotherapy response in patients with laryngopharyngeal carcinoma. (2007)
Ganly I, Talbot S, Carlson D, Viale A, Maghami E, Osman I, Sherman E, Pfister D, Chuai S, Shaha AR, Kraus D, Shah JP, Socci ND, Singh B
J Clin Oncol. 2007 Apr 10;25(11):1369-76.
 
Pathologic and molecular heterogeneity in imatinib-stable or imatinib-responsive gastrointestinal stromal tumors. (2007)
Agaram NP, Besmer P, Wong GC, Guo T, Socci ND, Maki RG, DeSantis D, Brennan MF, Singer S, DeMatteo RP, Antonescu CR
Clin Cancer Res. 2007 Jan 1;13(1):170-81.
 
Defining molecular profiles of poor outcome in patients with invasive bladder cancer using oligonucleotide microarrays. (2006)
Sanchez-Carbayo M, Socci ND, Lozano J, Saint F, Cordon-Cardo C
J Clin Oncol. 2006 Feb 10;24(5):778-89.
 
Oncogenic Kit signaling and therapeutic intervention in a mouse model of gastrointestinal stromal tumor. (2006)
Rossi F, Ehlers I, Agosti V, Socci ND, Viale A, Sommer G, Yozgat Y, Manova K, Antonescu CR, Besmer P
Proc Natl Acad Sci U S A. 2006 Aug 14;
 
Gene expression in ductus arteriosus and aorta: comparison of birth and oxygen effects. (2006)
Costa M, Barogi S, Socci ND, Angeloni D, Maffei M, Baragatti B, Chiellini C, Grasso E, Coceani F
Physiol Genomics. 2006 Apr 13;25(2):250-62.
 
Profiling bladder cancer using targeted antibody arrays. (2006)
Sanchez-Carbayo M, Socci ND, Lozano JJ, Haab BB, Cordon-Cardo C
Am J Pathol. 2006 Jan;168(1):93-103.
 
Nonequilibrium raftlike membrane domains under continuous recycling. (2005)
Turner MS, Sens P, Socci ND
Phys Rev Lett. 2005 Oct 14;95(16):168301.
 
MicroRNA profiling of the murine hematopoietic system. (2005)
Monticelli S, Ansel KM, Xiao C, Socci ND, Krichevsky AM, Thai TH, Rajewsky N, Marks DS, Sander C, Rajewsky K, Rao A, Kosik KS.
Genome Biol. 2005;6(8):R71.
 
Molecular profiling of tumor progression in head and neck cancer. (2005)
Belbin TJ, Singh B, Smith RV, Socci ND, Wreesmann VB, Sanchez-Carbayo M, Masterson J, Patel S, Cordon-Cardo C, Prystowsky MB, Childs G.
Arch Otolaryngol Head Neck Surg. 2005 Jan;131(1):10-8.
 
The absence of p53 promotes metastasis in a novel somatic mouse model for hepatocellular carcinoma. (2005)
Lewis BC, Klimstra DS, Socci ND, Xu S, Koutcher JA, Varmus HE.
Mol Cell Biol. 2005 Feb;25(4):1228-37.
 
Gene expression profiling allows distinction between primary and metastatic squamous cell carcinomas in the lung. (2005)
Talbot SG, Estilo C, Maghami E, Sarkaria IS, Pham DK, O-charoenrat P, Socci ND, Ngai I, Carlson D, Ghossein R, Viale A, Park BJ, Rusch VW, Singh B.
Cancer Res. 2005 Apr 15;65(8):3063-71.
 
Derivation of multipotent mesenchymal precursors from human embryonic stem cells. (2005)
Barberi T, Willis LM, Socci ND, Studer L.
PLoS Med. 2005 Jun;2(6):e161.
 
Use of laser-capture microdissection for the identification of marker genes for the ventromedial hypothalamic nucleus. (2005)
Segal JP, Stallings NR, Lee CE, Zhao L, Socci N, Viale A, Harris TM, Soares MB, Childs G, Elmquist JK, Parker KL, Friedman JM
J Neurosci. 2005 Apr 20;25(16):4181-8.
 
Gene expression in gastrointestinal stromal tumors is distinguished by KIT genotype and anatomic site (2004)
Antonescu CR, Viale A, Sarran L, Tschernyavsky SJ, Gonen M, Segal NH, Maki RG, Socci ND, DeMatteo RP, Besmer P.
Clin Cancer Res. 2004 May 15;10(10):3282-90
 
Site and mechanism of leptin action in a rodent form of congenital lipodystrophy (2004)
Asilmaz E, Cohen P, Miyazaki M, Dobrzyn P, Ueki K, Fayzikhodjaeva G, Soukas AA, Kahn CR, Ntambi JM, Socci ND, Friedman JM.
J Clin Invest. 2004 Feb;113(3):414-24
 
Computational identification of microRNA targets (2004)
Rajewsky N, Socci ND.
Dev Biol. 2004 Mar 15;267(2):529-35
 
Genome-Wide Profiling of Papillary Thyroid Cancer Identifies MUC1 as an Independent Prognostic Marker (2004)
Wreesmann VB, Sieczka EM, Socci ND, Hezel M, Belbin TJ, Childs G, Patel SG, Patel KN, Tallini G, Prystowsky M, Shaha AR, Kraus D, Shah JP, Rao PH, Ghossein R, Singh B.
Cancer Res. 2004 Jun 1;64(11):3780-9.
 
Transformation fingerprint: induced STAT3-C, v-Src and Ha-Ras cause small initial changes but similar established profiles in mRNA. (2004)
Paz K, Socci ND, van Nimwegen E, Viale A, Darnell JE.
Oncogene. 2004 Nov 4;23(52):8455-63.
 
A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations (2003)
Naef F, Socci ND, Magnasco M.
Bioinformatics. 2003 Jan 22;19(2):178-84
 
SMASHing regulatory sites in DNA by human-mouse sequence comparisons. (2003)
Zavolan M, Socci ND, Rajewsky N, Gaasterlamd T
Proc IEEE Comput Soc Bioinform Conf. 2003;2:277-86.
 
Cytokine-induced patterns of gene expression in skeletal muscle tissue (2003)
Alon T, Friedman JM, Socci ND.
J Biol Chem. 2003 Aug 22;278(34):32324-34. Epub 2003 May 15
 
Gene discovery in bladder cancer progression using cDNA microarrays (2003)
Sanchez-Carbayo M, Socci ND, Lozano JJ, Li W, Charytonowicz E, Belbin TJ, Prystowsky MB, Ortiz AR, Childs G, Cordon-Cardo C.
Am J Pathol. 2003 Aug;163(2):505-16
 
Oncogenic Ras and Akt Signaling Contribute to Glioblastoma Formation by Differential Recruitment of Existing mRNAs to Polysomes (2003)
Rajasekhar VK, Viale A, Socci ND, Wiedmann M, Hu X, Holland EC.
Mol Cell. 2003 Oct;12(4):889-901
 
Role for stearoyl-CoA desaturase-1 in leptin-mediated weight loss. (2002)
Cohen P, Miyazaki M, Socci ND, Hagge-Greenberg A, Liedtke W, Soukas AA, Sharma R, Hudgins LC, Ntambi JM, Friedman JM
Science. 2002 Jul 12;297(5579):240
 
The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons (2002)
Rajewsky N, Socci ND, Zapotocky M, Siggia ED.
Genome Res. 2002 Feb;12(2):298-308
 
Molecular classification of head and neck squamous cell carcinoma using cDNA microarrays (2002)
Belbin TJ, Singh B, Barber I, Socci N, Wenig B, Smith R, Prystowsky MB, Childs G.
Cancer Res. 2002 Feb 15;62(4):1184-90
 
Specific and nonspecific collapse in protein folding funnels (2002)
Chahine J, Nymeyer H, Leite VB, Socci ND, Onuchic JN.
Phys Rev Lett. 2002 Apr 22;88(16):168101. Epub 2002 Apr 05
 
Molecular profiling of bladder cancer using cDNA microarrays: defining histogenesis and biological phenotypes (2002)
Sanchez-Carbayo M, Socci ND, Charytonowicz E, Lu M, Prystowsky M, Childs G, Cordon-Cardo C.
Cancer Res. 2002 Dec 1;62(23):6973-80
 
Distinct transcriptional profiles of adipogenesis in vivo and in vitro (2001)
Soukas A, Socci ND, Saatkamp BD, Novelli S, Friedman JM. J Biol Chem. 2001 Sep 7;276(36):34167-74. Epub 2001 Jul 09
 
Landscape approaches for determining the ensemble of folding transition states: success and failure hinge on the degree of frustration (2000)
Nymeyer H, Socci ND, Onuchic JN.
Proc Natl Acad Sci U S A. 2000 Jan 18;97(2):634-9
 
Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction (2000)
Bruno WJ, Socci ND, Halpern AL.
Mol Biol Evol. 2000 Jan;17(1):189-97
 
Leptin-specific patterns of gene expression in white adipose tissue (2000)
Soukas A, Cohen P, Socci ND, Friedman JM. Genes Dev. 2000 Apr 15;14(8):963-80
 
Stretching lattice models of protein folding (1999)
Socci ND, Onuchic JN, Wolynes PG.
Proc Natl Acad Sci U S A. 1999 Mar 2;96(5):2031-5
 
Toward an outline of the topography of a realistic protein-folding funnel (1995)
Onuchic JN, Wolynes PG, Luthey-Schulten Z, Socci ND
Proc Natl Acad Sci U S A. 1995 Apr 11;92(8):3626-30
 
Sloan-Kettering Institute Memorial Sloan-Kettering Cancer Center