TCGA Lobular Data Snapshot

This page provides links to current data files for the TCGA Lobular Breast Cancer Project.

[FREEZE 03/26/14]

Revisions Snapshot

  • Snapshot Version: 2.1
  • Snapshot Date: March 26, 2014

If you would like to submit a new or updated file for the next snapshot, please email ciriello at cbio.mskcc.org

Core Stats

View data within the cBio Portal

Select the Lobular Case Set to explore this dataset with the cBio Cancer Genomics Portal.



Invasive ductal breast cancer




Copy Number Data

File Name Description File Size Date Stamp Note
  IDC_segmented_scna_minus_germline_cnv_hg19_F2.seg Copy number segmentation file < 6 MB 3/27/2014 FireHose StdData run 1/15/2014
  IDC_gistic_all_thresholded_by_genes_F2.txt Copy number segmentation file 27 MB 3/27/2014 FireHose Analyses run 9/23/2013



Mutation Data

File Name Description File Size Date Stamp Note
 IDC_dnaseq.maf Whole-exome sequencing 6 MB 2/18/2014 WUSTL Curated Somatic MAF (2/4/2014)



RNA-seq Data

File Name Description File Size Date Stamp Note
  IDC_rnaseqv2_RSEM_genes_normalized_data_F2.txt RNA-SeqV2 RSEM Genes Normalized Data 76 MB 3/27/2014 FireHose StdData run 1/15/2014



DNA-Methylation Data

File Name Description File Size Date Stamp Note
  IDC_dna_methylation_450K_F2.tar.gz DNA-methylation 450K [312 Cases] 1.2 GB 3/27/2014 FireHose StdData run 1/15/2014 *
  IDC_dna_methylation_27K_data_F2.txt DNA-methylation 27K [178 Cases] 164 MB 3/27/2014 FireHose StdData run 1/15/2014 *
* Original data matrices have been processed, files are provided in the following format



miRNA-seq Data

File Name Description File Size Date Stamp Note
  IDC_mirnaseq_illuminahiseq_data_F2.txt miRNA-seq data (Illumina HiSeq) [333 Cases] 4 MB 3/27/2014 FireHose StdData run 1/15/2014
  IDC_mirnaseq_illuminaga_data_F2.txt miRNA-seq data (Illumina GA) [158 Cases] 2 MB 3/27/2014 FireHose StdData run 1/15/2014



RPPA Data

File Name Description File Size Date Stamp Note
  IDC_rppa_protein_normalization_data_F2.txt RPPA data [358 Cases] < 1 MB 3/27/2014 MDACC