Cameron Brennan's R Scripts

The original GTS package was replaced as of 5/27/2008. There was an error in the original package that caused underscoring of complex CNA events. The new package has been fixed and has added functionality as well:

1. micro RNAs have been added to the default gene list.
2. GTS will now accept user-defined CNV and GE lists in the function call
3. GTS focality weighting can now be specified as the count of genetic elements ("unity"), the square root of the count ("sqrt"), or the physicial base pair interval ("physical")
4. GTS will now return the assignment of genes at each probe location